These Greek Yogurt Muffins with Chocolate Chips make the perfect low fat sweet snack. Moist, tender, and quick & easy to make!

Estimated reading time: 10 minutes
These Greek Yogurt Chocolate Chip Muffins are truly the most moist and delicious chocolate chip muffins you’ll ever make – they’re easy to make in only one bowl, they’re under 250 calories per muffin, and they bake up deliciously moist and tender and FULL of melty chocolate!

If you’ve ever eaten a dry, flavourless muffin you’ll definitely appreciate how adding Greek yogurt to muffin batter can make a BIG difference! Greek yogurt is super thick and creamy, which makes it a great ingredient to add to baked goods. It helps with moisture retention and creates muffins that are tender and ultra moist. Unlike regular yogurt, Greek yogurt is strained to remove excess liquid (called whey), which creates a concentrated yogurt that’s thick and oh so creamy.
Because of its high protein content and reduced water content, Greek yogurt contains more protein than regular yogurt. When you incorporate it into your muffin batter, those proteins trap moisture and prevent it from escaping during baking. The result is soft, tender muffins with the perfect crumb and just the right amount of moisture.
When choosing Greek Yogurt for baking recipes, be sure to go for an unflavoured or plain yogurt that’s not too high in fat (we like to use 2% in our recipes) with no added sugar or sweetener. Too much fat and added sugar will affect the outcome of baking recipes, so plain Greek yogurt is best.

There are so many reasons we LOVE making Muffins with Greek Yogurt! Here are just a few:
- They are EASY to MAKE – We love how simple this recipe is to make with ingredients that you probably already have on hand.
- They make the BEST SNACK or breakfast – These Greek yogurt chocolate chip muffins are great for snacks and breakfast on busy mornings.
- They’re easy to CUSTOMIZE – Add nuts or fresh berries in place of the chocolate chips to switch up the flavour to your tastes.
- They FREEZE well – We love making a big batch and throwing them in the freezer for a grab and go breakfast or snack!

Want to make the BEST Greek yogurt muffins? Follow all our PRO Tips and Tricks below!
It is important to bake your muffins right after you mix them since mixing the wet and dry ingredients activates the leaving agent. Preheat your oven first so you don’t have to wait for it to heat up after you’ve mixed the batter. This will help your muffins bake up nice and fluffy.
Use low fat to full fat Greek yogurt (1-2%) for this recipe. If you use fat free yogurt, the muffins might come out a little more dense and heavy because of the added water content in fat free yogurt.
Baking muffins with room temperature dairy and eggs helps the batter come together more smoothly and keeps the muffins soft and fluffy.
Mix your dry ingredients first, separately from your wet ingredients. This will make sure the baking powder is mixed evenly throughout the batter, helping the muffins rise evenly.
When mixing your dry and wet ingredients together, mix only until the flour disappears (about 8-10 turns of a mixing spoon when mixing by hand). This helps the muffins stay fluffy and soft and prevents tunnelling (when large holes form in the batter from over-mixing).
Measure the flour in a dry measuring cup and scrape off the excess off the top with a knife. Liquids should be measuring in a liquid measuring cup. Measuring the liquid correctly can prevent you from adding too much, which makes the muffins dense and heavy.
If you want your muffins to bake evenly, divide the batter as evenly as you can between the muffin cups. An ice cream scoop creates the perfect portion size.

If you are having trouble with this muffins with Greek yogurt recipe, follow the solutions we recommend below.
The muffins can be dry after baking if you accidentally add too much flour. Make sure to scoop and level off the flour before adding it to the bowl. Using fat free yogurt can also make the muffins dry after baking.
Over-mixing the batter can lead to dense muffins. Mix only until the flour has been incorporated to ensure light and fluffy muffins. The muffins are can be dense and heavy if the ingredients are not measured properly.
Under-baking leads to the inside being gummy on the Inside. Use a toothpick to test the doneness and remove them from oven when the tops are golden brown.
Make sure to fill the muffin pan evenly, and fill them 3/4 full so that the muffins bake evenly. Too much batter will cause them to overflow and make a mess of the oven, while too little batter will make the muffins flat on top and too short.
The leavening agent in muffins is usually baking powder (sometimes combined together with baking soda), which acts quickly as soon as the liquid and dry ingredients come together. To get fluffy muffins with the nice dome shape on top, get them in the oven as fast as you can after mixing.

Here are the kitchen items you’ll need to make these delicious muffins (paid links):
- a good mixing bowl
- a wooden spoon
- a silicone spatula
- measuring cups for dry ingredients
- measuring spoons
- muffin tins
- measuring cups for liquid ingredients
If you’re a more seasoned baker and you want to up your muffin game, we’d suggest picking up an ice cream scoop like this one for portioning out the batter evenly between the muffin cups. Good quality paper muffin liners are also nice to have for easy removal.
A cooling rack is also helpful for cooling the muffins, especially if you’re making multiple batches at once and need to re-use your pans. And although we recommend making muffins by hand, an electric hand mixer or stand mixer can also be helpful for big batches of muffins – but only if you’re a seasoned baker and know how to use an electric mixer without over-mixing (over-mixing is the cardinal sin of muffin baking!).

To make this Greek yogurt muffin recipe, you’ll need these ingredients (paid links):
- 1 1/2 cups all purpose flour
- 1/2 cup white sugar
- 1 1/2 teaspoons baking powder
- 1/2 teaspoon salt
- 1/4 cup skim milk
- 3/4 cup low fat Greek yogurt (1-2%)
- 1/4 cup vegetable oil
- 2 eggs
- 1 teaspoon vanilla extract
- 3/4 cup chocolate chips

Try these variations on this simple Greek yogurt chocolate chip muffins!
- Peanut Butter – Add in 1/4 cup of peanut butter and use dark chocolate chips instead of semi-sweet chocolate chips.
- Dark Chocolate – Add in 1/4 cup of cocoa powder to make these extra chocolate muffins with dark chocolate chips.
- Oatmeal – Swap 1/4 cup of flour with 1/4 cup of oatmeal to make the muffins more hearty.
- Chai Chocolate – Add in cinnamon, nutmeg and ginger to the batter for a Chai Chocolate tasting muffin.
- Orange – Stir in orange zest to the batter for a hint of citrus.
EASY NO FAIL MUFFIN RECIPES AND BAKING TIPS
Get my easy no-fail muffin baking e-cookbook!

Time needed: 33 minutes
Follow these steps for the perfect Greek yogurt muffins!
- Preheat your oven.
Preheat your oven to 375 degrees Fahrenheit (190 degrees Celsius) and line a 12-cup muffin tin with paper liners.
- Whisk the dry ingredients together.
In a large bowl whisk together the flour, sugar, baking powder, and salt.
- Add the wet ingredients.
Add the milk, Greek yogurt, vegetable oil, eggs, and vanilla, then stir everything together with a wooden spoon or a spatula.
- Add the chocolate chips last.
Gently stir in the chocolate chips once everything is combined, just until they’re distributed evenly throughout.
- Bake to perfection.
Portion the batter into the 12 muffin cups evenly and bake at 375 degrees Fahrenheit (190 degrees Celsius) for 17-19 minutes or until the muffins are cooked through (test with a toothpick!) and are a light golden brown colour on top.

Why put Greek yogurt in muffins?
Greek yogurt adds a lot of moisture to muffins and gives them a delicious flavour and texture.
Can you substitute Greek yogurt for milk in baking?
Yes, we suggest substituting Greek yogurt for milk in muffin recipes using a 1:1 ratio. You can also substitute plain regular yogurt for milk in muffin recipes.
What is a substitute for Greek yogurt in muffins?
Choose plain regular yogurt in muffins if you don’t have Greek yogurt on hand. You can also use sour cream as a substitute for Greek yogurt.
Can I skip yogurt in muffins?
We don’t recommend skipping yogurt in muffin recipes. Instead, substitute it with sour cream or even milk.
What does yogurt do in baking?
Yogurt creates a tangy flavour and a moist, tender texture.
Can I use Greek Yogurt instead of milk for muffins?
Yes, we suggest substituting Greek yogurt for milk in muffin recipes using a 1:1 ratio. You can also substitute plain regular yogurt for milk in muffin recipes.
How long to bake Greek yogurt muffins?
Greek yogurt muffins require about 17-19 minutes of baking time.
How do I store muffins with Greek yogurt?
These muffins keep in an airtight container for up to three days at room temperature.

We hope you love these Greek yogurt muffins as much as we do! Let us know in the comments below, what’s your favourite go-to muffin recipe? We’d love to know!
- Best Ever Banana Muffins
- Chocolate Chip Mini Muffins
- Best Ever Rhubarb Muffins
- Zucchini Blueberry Muffins
- Double Chocolate Zucchini Muffins
- Raspberry Lemonade Muffins
- Lemon Pistachio Muffins
- Cranberry Orange Muffins
- Apple Carrot Ginger Muffins
Watch the video below to see exactly how we make this recipe. You can find many more deliciously simple recipe videos on our YouTube channel!
If you made this, share a photo!
Are you trying this recipe? Use the comment form below to share your take; now with support for image uploads and comment voting!
Greek Yogurt Muffins with Chocolate Chips

Recipe: Ingredients
- 1 1/2 cups all purpose flour
- 1/2 cup white sugar
- 1 1/2 teaspoons baking powder
- 1/2 teaspoon salt
- 1/4 cup skim milk
- 3/4 cup low fat Greek yogurt (1-2%)
- 1/4 cup vegetable oil
- 2 eggs
- 1 teaspoon vanilla extract
- 3/4 cup chocolate chips
Recipe: Instructions
- Preheat your oven to 375°F (190°C) and line a 12-cup muffin tin with paper liners.
- In a large bowl whisk together the flour, sugar, baking powder, and salt.
- Add the milk, Greek yogurt, vegetable oil, eggs, and vanilla, then stir everything together with a wooden spoon or a spatula.
- Gently stir in the chocolate chips once everything is combined, just until they’re distributed evenly throughout.
- Portion the batter into the 12 muffin cups evenly and bake at 375°F (190°C) for 17-19 minutes or until the muffins are cooked through (test with a toothpick!) and are a light golden brown colour on top.
- Let the muffins cool for several minutes and enjoy warm.
Recipe: Notes
Storage and Reheating Instructions
These muffins keep in an airtight container for up to three days at room temperature. Reheat slightly before serving, if desired. Freeze in an airtight container for up to 3 months.Recipe: Nutrition
Notice: Nutrition is auto-calculated, using Spoonacular, for your convenience. Where relevant, we recommend using your own nutrition calculations.
EASY NO FAIL MUFFIN RECIPES AND BAKING TIPS
Get my easy no-fail muffin baking e-cookbook!
I haven’t tried them yet to give a review about the taste.. but after baking for 17 mins at a slightly lower temp than stated I found my muffins spilled over onto the baking tray.. slightly disappointed as I wanted to give these to my new parent in laws.. but they look pretty messy
I followed the recipe and used the exact amounts stated.. I’m not sure what could’ve happened?
Sounds like you might have overfilled them. Also, baking them at the temperature stated in the recipe is very important! I hope you try them again! Happy baking ☺️
Love this recipe! Perfect result with little effort! Thanks a lot Chrissie.
You’re welcome Cristina!!
We just discovered this recipe and have already made it 2x in 3 days! It is so good. I subbed a banana for the oil and they are delicious with minimal banana flavor. I also used a mini muffin tin and baked for 12 min, perfect results. Thank you! My kids and I love these.
Thanks so much for you feedback Melissa!!😊
I made these with gluten free flour, unsweetened vanilla almond milk, vanilla coconut yogurt, half the sugar & 1/2 cup of mini chocolate chips. They browned up just fine and were moist & delicious!
Thanks for your feedback Emily! Glad they turned out delicious!!
Delicious! Like others mine weren’t browning, to solve 2min before removing from the oven I did a quick wash with melted butter (kind of like an egg wash) to get them more golden in color. Overall taste is great! (Followed all directions to a T using metric units)
I’m so happy you liked them! That’s such a great idea with the butter! Happy baking!☺️
Hi your chocolate chip muffins are increible I made gluten free ones as I’m celiac, I used lactose free long life milk as I have lactose issues too and I used lactose free yogurt they were yum I live in Melbourne Australia.
How can I send you a photo?
I’m happy you enjoyed them. Send me an email at chrissie@thebusybaker.ca Happy baking ☺️
What would the baking time be for egg molds in an instant pot?
I’ve never tried that, but it sounds like a good idea. I couldn’t tell you, since i’ve never tried it but if I do, I’ll definitely let you know.
The muffin is very basic. It has a nice flavor, moist texture and is very chocolatey. I doubled the recipe and added about 1 1/2 cups of chocolate chips rather than 2 cups. That’s plenty of chocolate chips. The appearance is quite pale and the muffin didn’t get a golden brown color. The cooled muffins may be warmed slightly in the microwave before serving and that brings out the flavor. I am freezing the muffins for a handy chocolatey treat in the future. I would have increased the rating if the muffin had browned and had a different appearance.
Thanks for your feedback!
Does anyone know how many points for WW??
Can I substitute vanilla Greek yogurt instead of plain?
You can, although the muffins will be sweeter as the vanilla likely contains sugar.
Hi, thank you for this recipe!!
I made a few changes and it still came out great.( maybe not as sweet as yours but it was sweet enough for me)
I used 3/4 cup AP flour, 1/2 cup Whole Wheat flour and 1/4 cup Oat flour.
Replaced the skim milk with unsweetened Almond Milk.
Replaced the white sugar with Coconut sugar.
1/4 cup semi sweet Choc chips instead of 1 cup.
Added 1/4 cup chopped walnuts for a crunch.
Thanks so much for your feedback Vanessa!🙂
Can these be frozen??
Yes they can!
Made them today oh my word they are so yummy!! Thank you so much for sharing this recipe.
You’re welcome! So happy to hear they turned out delicious!!
flavoring was great, but the muffins were not moist.
I’m sorry you didn’t find the muffins moist enough. Sometimes over-baking can cause the muffins to dry out more than they should, so perhaps you could try reducing the baking time by a few minutes.
I would make this recipe again but would add 1/2 tsp of baking soda to help muffins brown. Maybe also increase temperature to 375F to get more of a muffin crown and possibly reduce the quantity of chocolate chips to 1/2 cup.
Thanks for your feedback and tips!
Do you use yogurt at room temperature ? Is chilled ok?
It’s better if you take it out of the fridge in advance. Happy baking!
WOW!! These were incredible. I used Kirkland greek Yogurt Plain and convection bake and they were brown on top. I will try with blueberries next time….I love that they are not too sweet!
So glad you liked them!!
Tired these today! I love the flavour and texture. The only thing I have a problem with is that they get stuck to the muffin cups 🙁 I mean no harm eating them off the paper.. but hope I can understand why it happens.
They stick to the paper because of the low fat content.
can i use skyr instead of greek yogourt
Yes, that should work. I’ve never tried it myself but i believe it should be fine. Happy baking!
These look delish! I have a container of plain yogurt I need to use up. Would that work in place of the Greek yogurt? Would the amount needed change? Thanks!
Plain yogurt has a higher water content so the result will be slightly different, but the recipe will still work well. Happy baking!
I didn’t have Greek yogurt either, so I used plain yogurt, and omitted the milk. It worked out great. Also didn’t have chocolate chips, so used Blueberries instead, and a little bit of cinnamon; delish! =)