These Healthy Banana Muffins are a great snack for kids because they’re sweetened only with fruit and they’re full of vegetables and whole grains! They’re the perfect healthy snack for on-the-go and they make a great addition to healthy school lunches.

Estimated reading time: 10 minutes
Not all muffins are created equally, and these Healthy Banana Muffins are on the opposite end of the spectrum from those bakery-style cake-like muffins that are basically dessert. These healthy muffins are made with shredded veggies, mashed bananas, and whole grains, and they’re refined sugar-free, making them a super wholesome and nutritious snack that will keep you satisfied. If you’re looking for a healthy alternative to a conventional muffin that’s diabetic friendly, great for young kids, or perfect for anyone on a low-sugar diet, these healthy banana muffins are the recipe you need!
There are so many reasons why we LOVE these healthy muffins for kids! Here are just a few:
- They are full of HEALTHY INGREDIENTS – These healthy banana muffins are packed with shredded vegetables and sweetened with fruit. They contain tons of fibre and healthy whole grains.
- They are SUGAR FREE – There is no refined sugar in these healthy muffins and they get their sweetness from bananas. This makes them a perfect healthy option for babies or toddlers, or anyone on a sugar-free diet.
- They make the BEST SNACK – These muffins are a great snack for kids and adults alike, and a great healthy option for school lunches, since they don’t contain nuts or many other common allergens.
- They are EASY to make – The muffin batter comes together in one bowl and bakes to perfection.

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Try these tips to make the BEST sugar free muffins you’ve ever made!
Read the recipe in its entirety before you begin and make sure you have all the ingredients. You can even measure out the ingredients in advance before you combine them. This can help you measure accurately.
It is important to bake your muffins right after you mix them since mixing the wet and dry ingredients activates the leavening agent. Preheat your oven first so you don’t have to wait for it to heat up after you’ve mixed. This will help the muffins bake up nice and fluffy.
Liquid should be measured in a liquid measuring cup, NOT a measuring cup used for dry ingredients like flour or sugar. Measuring the liquid correctly can prevent you from adding too much, which makes the muffins dense and heavy.
You might be tempted to substitute some of the grated veggies for fruit or add raisins or nuts, but be careful not to make too many changes to the recipe. Adding up to 3/4 cup of add-ins is fine, but substituting ingredients might change the outcome of the recipe as different ingredients have different levels of moisture.
When mixing your dry and wet ingredients together, mix only until the flour disappears (about 8-10 turns of mixing spoon when mixing by hand). This helps the muffins stay fluffy and soft, and prevents tunnelling (large holes left from bubbles in the batter).
If you want your muffins to bake evenly, divide the batter as evenly as you can between the muffin cups.
Resist the urge to eat your muffins hot from the oven. Letting them cool for several minutes (10 minutes or more is best) will help them keep their shape and texture – muffins actually continue baking on the inside for several minutes after they’ve been removed from the oven.

If you are having trouble with this healthy banana muffin recipe, follow the solutions we recommend below.
Over-mixing can lead to dense muffins. Make sure to fold the wet and dry ingredients together just until the flour has disappeared.
These muffins will be more moist due to the veggies and fruit and no sugar but if they are too moist, it could be due to excess liquid from the zucchini, or excess liquid from using frozen bananas. We recommend using fresh brown bananas for this recipe, as frozen bananas, when thawed, have extra liquid that needs to be strained out before use. If the batter is too wet, then an extra few tablespoons of rolled oats or flour can absorb some of the extra liquid.
The muffins can become too dry and break apart when they are baked for too long or if the dry ingredients haven’t been measure properly. Make sure to check at the 15 minute mark and watch for the gold brown tops to tell when the muffins are done.
Let the muffins cool completely to room temperature before trying to store them. This will prevent them from becoming soggy, as they give off heat in a closed container.
When the oven is not preheated, the cold oven will cause the muffins to bake unevenly. Make sure to preheat the oven first before adding the muffins.
Sugar-free muffins can end up being bland, so make sure to add in the veggies and fruit mentioned in the recipe to give the flavour to the muffins. Don’t forget the salt, either – the salt helps bring out the natural sweetness of the fruit.

You’ll need these kitchen items on hand to make these healthy banana muffins (paid links):
- mixing bowls
- 24-cup muffin tin
- measuring cups and spoons
- Silicone Spatula
- wooden spoon
- Grater
- Cooling Racks
- liquid measuring cups

To make these sugar free muffins you will need these ingredients on hand (paid links):
- 1 cup whole wheat flour
- 1/2 cup rolled oats
- 1 teaspoon baking soda
- 1/2 teaspoon salt
- 2 eggs
- 1 large carrot approximately 3/4 cup grated
- 1/2 cup grated zucchini
- 1/2 cup grated apple
- 1/4 cup canola oil
- 3 mashed bananas (approximately 3/4 cup) or 2 mashed bananas and 1/4 cup unsweetened applesauce
Try these simple variations on Toddler muffins!
- Cinnamon or Nutmeg – Add cinnamon or nutmeg in to the batter for additional flavour and make a streusel topping made of rolled oats, coconut oil, and cinnamon.
- Blueberry Oat – Add 1/2 cup fresh blueberries and lemon zest to the batter and sprinkle oats on top before baking .
- Almond butter or natural peanut butter – Add in a few tablespoons of nut butter for added protein.

Time needed: 30 minutes
Follow these steps to make the BEST Healthy Muffins for Kids!
- Preheat oven and grease pan.
Preheat your oven to 350 degrees Fahrenheit (175 degrees Celsius) and grease a 24-cup mini muffin tin (or line a 12-cup muffin tin with paper muffin liners).
- Mix dry ingredients.
Add the whole wheat flour, rolled oats, baking soda, and salt to a large bowl and whisk to combine.
- Whisk together wet ingredients.
Mash the ripe bananas. Into a large liquid measuring cup, add the eggs and whisk them with a fork to break up the yolks. Add the canola oil, the grated carrot, the grated zucchini, grated apple, and the mashed ripe bananas, then mix with a spoon until all the wet ingredients are combined.
- Combine wet and dry ingredients.
Pour the wet ingredients into the bowl with the dry ingredients and fold everything together using a spatula just until no streaks of flour remain.
- Spoon batter into the muffin pan.
Drop about a tablespoon of the muffin batter into each of the prepared mini muffin cups and bake at 350 degrees Fahrenheit (175 degrees Celsius) for about 18-22 minutes or until the muffins are a nice golden brown. If using a larger muffin tin, divide the batter evenly between the 12 muffin cups. (See the “Notes” section at the end of the recipe card for baking time.)
- Let them cool.
Remove the muffins from the oven and from their tin and let them cool completely on a cooling rack before enjoying!
- Enjoy the muffins.
This recipe makes about 24 mini muffins or 12 regular sized muffins.

How do I store these healthy banana muffins?
Most muffins are best enjoyed the day they’re made, but they will last for up to 3 days when stored at room temperature in an airtight container. They stay freshest in the fridge or freezer since they are made almost entirely of fruit and vegetables. Be sure to thaw them at room temperature before enjoying.
Can I freeze these toddler muffins?
Yes, you can freeze these healthy banana muffins. They stay best in the freezer in an airtight container or plastic freezer bag since they are made with fruit and veggies. Store in small batches and grab as you go. Store them in the freezer for up to 2 months for optimum freshness.
How long do I bake these sugar free muffins if I make them regular sized?
If you want to make this recipe in regular sized muffin tins, you should bake them at 350 degrees Fahrenheit (175 degrees Celsius) for 32-35 minutes or until they are golden brown on top and a toothpick comes out fairly clean.
How to defrost homemade sugar free muffins?
When defrosting muffins, remove the lid from the container they were stored in so any liquid can evaporate as they defrost. Let them come to room temperature before enjoying.
Why are the healthy banana muffins so moist?
These muffins are very moist because they contain a lot of fruit and vegetables (because they are made for toddlers and people who are limiting their intake of refined sugars). Therefore, they are softer and more moist than normal muffins that contain high amounts of sugar.
Can I add nuts or chocolate chips to these healthy banana muffins?
It’s possible to add up to 3/4 cup of add-ins like chocolate chips or chopped walnuts or pecans to this recipe, but we don’t recommend adding more than 3/4 cup. If you do add nuts, be sure to stir them into the batter gently right before baking.
Can I add Greek yogurt to this healthy banana muffin recipe?
We don’t recommend adding any Greek yogurt, as there is already enough moisture from the mashed bananas and other fruits and veggies.
These muffins taste bland. Can I add more flavour?
Yes! Feel free to add some vanilla extract, cinnamon, or even nutmeg for flavour.
Are these healthy banana muffins gluten-free and dairy-free?
Yes, these muffins are dairy-free, but because they contain whole wheat flour they are not gluten-free. To make them gluten-free, simply substitute the whole wheat flour for gluten-free oat flour. We don’t recommend using other gluten-free flour (like almond flour) in this recipe as it will affect the outcome of the recipe significantly. You can also use white whole wheat flour in this recipe.
Can I use a different oil instead of vegetable oil in this recipe?
Yes, feel free to substitute the vegetable oil with avocado oil, melted coconut oil, or even melted butter.
Do I need to add a sweetener to this recipe?
No need to add honey or maple syrup as these muffins are sweet enough with the added fruit.
We hope you enjoy this recipe for Toddler Muffins! Let us know in the comments below, what’s your kids’ favourite healthy snack? We’d love to know!
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Watch the video below to see exactly how we make this recipe. You can find more delicious recipe videos on our YouTube channel.
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Healthy Banana Muffins

Recipe: Equipment
Recipe: Ingredients
- 1 cup whole wheat flour
- 1/2 cup rolled oats
- 1 teaspoon baking soda
- 1/2 teaspoon salt
- 2 eggs
- 1 large carrot approximately 3/4 cup grated
- 1/2 cup zucchini grated
- 1/2 cup apple grated
- 1/4 cup canola oil
- 3 mashed bananas (approximately 3/4 cup) or 2 mashed bananas and 1/4 cup unsweetened applesauce
Recipe: Instructions
- Preheat your oven to 350 degrees Fahrenheit (175 degrees Celsius) and grease a 24-cup mini muffin tin.
- Add the whole wheat flour, rolled oats, baking soda, and salt to a large bowl and whisk to combine.
- To a large liquid measuring cup, add the eggs and whisk them with a fork to break up the yolks. Add the canola oil, the grated carrot, the grated zucchini, grated apple, and the mashed bananas and mix with a spoon until all the wet ingredients are combined.
- Pour the wet ingredients into the bowl with the dry ingredients and fold everything together using a rubber spatula just until no streaks of flour remain.
- Drop about a tablespoon of the muffin batter into each of the prepared mini muffin cups and bake at 350 degrees Fahrenheit (175 degrees Celsius) for about 18-22 minutes or until the muffins are a nice golden brown.
- Remove them from the oven and from their tin and let them cool completely on a cooling rack before enjoying!
Recipe: Notes
A Note about Flavour
To make these muffins more flavourful, add a teaspoon of vanilla extract to the wet ingredients and a teaspoon of cinnamon to the dry ingredients before mixing the batter. If making them for a baby or toddler, feel free to leave out these flavourful ingredients.Freezer Instructions
Store in an airtight container or plastic freezer bag. Store them in the freezer for up to 2 months for optimum freshness.Storage Instructions
Most muffins are best enjoyed the day they’re made, but they last for up to 3 days when stored at room temperature in an airtight container. They stay freshest in the fridge or freezer since they are made almost entirely of fruit and vegetables.Recipe: Nutrition
Notice: Nutrition is auto-calculated, using Spoonacular, for your convenience. Where relevant, we recommend using your own nutrition calculations.
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These were GREAT! My batter was a lot more wet than in the video, but they still turned out wonderfully. It ended up making 46 mini muffins (plenty to freeze!) I baked them in paper cups, and they stuck to the paper pretty bad. Next time I won’t use paper.
I’m so happy you enjoyed them! Thank you for taking the time to leave your feedback!
I made these once already, but I am now 37 weeks pregnant and I don’t feel like cleaning out a mini muffin tin after I’m done. Do you think I could do this in a 9 by 13 Pyrex baking dish? And then cut them into little bite-size pieces?
Sure you can but you’d have to adjust the baking time. I suggest that you lower the temperature by a bit and let it bake for longer. Use the toothpick test to see if it’s done! Happy baking and congratulations!
I just made these and they are tasty. Have you ever tried adding nuts or seeds for crunch? What would you suggest?
Hi Maria, this recipe is pretty forgiving, you can try adding some walnuts for instance 🙂 Enjoy!
Can we use baking powder instead of baking soda? Will the quantity be different ?
Yes, you can use 3 tsp baking powder instead of the baking soda. Happy baking ☺️
Delicious! My daughter loved making them and eating them too!
Just wondering how you suggesting storing these?
Thanks for your feedback Marisha! They keep well in a airtight container for about 48 hours at room temperature, but I love to store them in the freezer in small batches. Hope this helps!
Hello! These look delicious! I was wondering if I could store them in the freezer and if they would be okay. My toddler is a small eater!
Hi Izzy, I love to store them in the freezer in small batches!😊
Hi. On my part of the world we don’t get apple sauce what can I use instead or can one omit this step? 🤔
You can just mash the 3 bananas and not substitute them for applesauce.
Love these! They turned out great! Both my 16 month old and I have been gobbling them up. I did squeeze some of the liquid from the grated zucchini and bake them 3-4 minutes longer than indicated as I’ve had difficulties before with such fruit-rich muffins being uncooked in the middle. Didn’t have that problem here!
Thanks so much for your review Shannon! Glad they turned out perfect!🙂
My 2 year old gave these muffins two thumbs up and she’s quite the critic! Added cinnamon and vanilla as many others have.
If I could offer a suggestion, within the ingredients list to indicate actual measurement for bananas and carrots. After a failed first batch, waaaay too moist, I scrolled through your comments section and made some adjustments and the second batch was a success. I used exactly 2/3 cups grated carrots, 1 1/2 cups mashed bananas (which was 3 bananas for me) and squeezed excess water out of zucchini. And they turned out great! Would just like to save other bakers the headache and wasted food. Thanks!
Thanks for you feedback Kristina!!😊
Awesome muffins!! My toodler and babe both loved and I keep popping them in as I walk by! After reading the comments I may try them with beets and greek yogurt next time. I also added cinnamon as the kids love it!
Thanks for your feedback Rachel!!🙂
I like the idea of healthy toddler muffins, and have made a few for my 1 year old! However this recipe did not work out for me at all… I followed the recipe exactly and the inside of the muffins are undercooked/ mushy, despite me cooking them for an extra 10 minutes. I’m thinking maybe the zucchini needed to be strained, but that should perhaps be included in the recipe instructions… I’m sad to have wasted so many good ingredients.
We’ve recently made some updates to the recipe so the muffins are less moist. However these muffins are very moist because they contain a lot of fruit and vegetables(because they are made for toddlers and people who are limiting their intake of refined sugars). Therefore they are softer and more moist than normal muffins that contain high amounts of sugar.
That looks so yummy and healthy. Thanks for the recipe.
You’re welcome Deeksha!!
Best muffins ever. I didn’t have zucchini’s, so I replaced them with broccoli and still tasted delicious. My twin toddler loved them, so did my picky eater husband. Thank you so much for sharing this receipt.
Thanks so much for letting us know! Glad they liked them!!
I’m not much of a baker. I enjoy it, but don’t bake from scratch often. I think it’s because I know how delicate the process is and I’m mistake prone. Anyhow, I really want to try making these. Can you see any problem with adding chocolate chips to the mix?
Hi Emmie, I don’t see a problem with adding a few chocolate chips!🙂I hope you give it a try and let us know how they turn out!
My 18 month old won’t eat these 🙁 he gagged and won’t touch them. I ate 1 and it is delicious. Should I just keep introducing it? Cut it up in smaller pieces? I really want him to love these and keep trying new foods!
Sorry to hear that! My kids went through picky phases too. Keep at it 🙂 You’re doing great!
Hi! Could you provide a volume measurement equivalent for the number of bananas you use? Bananas vary in size, and I’d love to get the recipe right the first time. Thank you!
The recipe has been updated and the exact measurements have been included!
I baked these at least 10min longer than stated bc the middle would not firm up. I’m assuming I used too much zucchini, banana, and carrot. Could you include the weight of carrot, banana, & zucchini? Not sure what else could have gone wrong…
The recipe has been updated and the exact measurements have been included!
Hi! Is there another fruit I could substitute the bananas for? Possibly blueberries? Thanks!
Adding blueberries won’t replace the sweetness or texture of the bananas.
I’ve made these several times and love how easy, versatile and healthy they are. They’re really hard to mess up! I add 1/4 ground flax, 2 TBSP chia seeds and 1 TSP cinnamon, plus a 1/2 cup oat milk to compensate for the extra fillings. I also sub olive oil for the canola and add 1/3 cup dairy free choc chips. I get about 36 mini muffins if I use liners and they don’t last long 🙂
Thanks Tessa, yes is a pretty forgiving recipe!☺️
I’ve made this a number of times and my toddler loves them. They’re so great for when we’re on the road. I’ve made with zucchini or apple replacing the zucchini – both are great. The key is squeezing the water out. I usually buy pre-grated carrots as I find grating carrots a huge pain! I think I’ll try with other fruits and veggies also! And maybe a bit of peanut butter?
So glad you like them! The addition of peanut butter sounds good! Let me know how they turn out.😊