This Protein Bagels recipe makes the BEST cottage cheese bagels with only 4 basic ingredients. An easy-to-make, high protein bagel recipe with 14 grams of protein per bagel!

Estimated reading time: 12 minutes

If you’re trying to add more protein to your diet, you’re not alone. It seems like everybody is thinking more about their health, more about their physical fitness, and more about increasing their protein intake. This High Protein Bagels recipe is one of our favourite high-protein recipes made with everybody’s favourite high-protein ingredients: cottage cheese!
These protein bagels are SO easy to make by hand, their taste and texture is SO similar to standard bagels (which isn’t true for all high-protein bagel recipes online these days…), and they’re the perfect base for a healthy protein-packed breakfast, lunch or even dinner! Trust us, you’re going to LOVE this one!

Protein bagels are a healthier twist on traditional bagels, with a recipe that’s modified to include ingredients for added protein. They’re perfect for anyone looking to boost their protein intake while still enjoying delicious food and baked goods. Unlike standard bagels, which are primarily made from flour, water, salt, and yeast, protein bagels incorporate high-protein cottage cheese to enhance their protein content AND their texture and flavour!
The bake up just like regular bagels, minus the boiling step, and they’re a great base for a delicious meal or snack!

There are SO many reasons we LOVE these protein bagels. Here are just a few:
- They have a HIGH PROTEIN CONTENT: Each bagel packs a protein punch with 14 grams of protein, helping to keep you feeling full and helping you meet your protein goals.
- Their CLASSIC TASTE AND TEXTURE: By using yeast instead of baking powder and allowing the dough to rest for a short time, these cottage cheese bagels have a traditional chewy texture and a classic bagel flavour.
- They’re NUTRITIOUS: Cottage cheese not only adds protein, but it also adds other essential nutrients.
- The recipe calls for SIMPLE INGREDIENTS: This recipe sticks to basic, easy-to-find ingredients, making it a simple recipe to make anytime with ingredients you probably already have on hand.
- They’re GREAT FOR MEAL PREP: Make a batch on the weekend, and you’ve got quick breakfast or lunch option ready for a busy week.

One of our favourite things about these protein bagels is their versatility. Here are some tasty, high-protein ideas for serving:
- Smoked Salmon: Top with smoked salmon, a light smear of cream cheese, and capers for a classic combination.
- Turkey: Add some mayo, sliced turkey, roasted red peppers, sliced avocado, and a dollop or two of hummus.
- Grilled Chicken: Top each half with roasted peppers, red onions, sliced grilled chicken and some sharp cheddar cheese.
- Veggies: Add some mayo, then slices of tomatoes and cucumbers, and top with feta cheese.
- Egg Salad: Top with your favourite egg salad and chopped green onions or chives.
- Chicken Salad: Add your favourite chicken salad recipe (or use ours!) and some lettuce and tomato for a delicious bagel sandwich.
- Tuna Melt: Add canned tuna, onions, chopped celery, and mayo and top with shredded cheese and broil for a healthier tuna melt.
- Breakfast Sandwich: Make a breakfast sandwich with a slice of Canadian bacon, a fried egg, and a slice of cheddar cheese.
- Sweet: Spread with peanut butter or almond butter with slices of banana or apple, and a sprinkle of chia seeds.

There are so many ways to make protein bagels, but here’s how WE recommend making yours the BEST they can be!
We know, it would be so much faster and easier to use baking powder instead of yeast in this bagel recipe. But we don’t recommend it. Adding yeast adds SO much flavour and if you want your protein bagels to taste anything like a traditional bagel, skip the baking powder and opt for yeast instead.
Don’t cut corners here. Be sure to blend the cottage cheese completely so it’s smooth with no lumps. This will help the dough come together better and the bagels to bake more evenly with a similar texture to traditional bagels.
Lower fat cottage cheese contains slightly more water and less fat than high-fat cream cheese does. This makes the bagel dough easier to handle and gives it a similar texture to traditional bagels. Using low fat cottage cheese also helps keep the calories in the recipe low, and lower fat cottage cheese often has a higher protein conten,t too!
Making sure your cottage cheese is at room temperature before you blend it and use it in this recipe will help the dough come together a lot better. Cold cottage cheese will create a tougher dough that’s harder to work with.
Knead your dough for a few minutes by hand until the dough forms a ball. We recommend mixing the dough by hand, not in a mixer. Kneading the dough helps develop the gluten in the dough and resting helps the dough relax so it’s easier to handle when you’re forming the bagels.
Be sure to brush the tops with egg wash for that classic bagel shine. This also helps any toppings stick, so don’t skip this step if you’re adding salt or bagel seasoning on top!

Here’s a few issues you might encounter when making these protein bagels and how we recommend fixing or preventing them:
Don’t be surprised if the dough is shaggy and dry – this is normal. If you can’t seem to get the dough to absorb all the flour, add a teaspoon of water into the dough and continue to mix with your hands. The dough should come together, but it will still be quite dry and rough.
If you’ve left the dough to rest and it hasn’t grown too much, it’s no big deal. Protein Bagel dough is a bit tough and doesn’t rise too much – the rising time is mainly to allow the flavour to develop so the bagels taste like bagels!
If the dough is too sticky, just add a tablespoon or two of flour as you’re trying to form the bagels. You can also oil your hands a little bit as you’re working with the dough to prevent it from sticking to your hands.
Be sure to form the bagels with very large holes. The holes naturally close slightly as the bagels puff up in the oven, so if they’re larger before baking this will help.

Here’s everything you’ll need to make these Protein Bagels (paid links):

Here’s everything you’ll need to make this High Protein Bagels recipe (paid links):
- 3 cups all purpose flour
- 2 teaspoons active dry yeast
- 1 teaspoon salt
- 2 cups cottage cheese, at room temperature
For the egg wash and topping:
- 1 egg
- 2 tablespoons water
- 3 tablespoons Everything Bagel Seasoning (optional)

There are so many different ways to make these cottage cheese bagels your own. Here are a few variations on the basic recipe that we LOVE:
- Cheese and Onion: Add sliced green onions and grated cheese to the dough for a cheesy, sharp flavoured bagel.
- Cinnamon Raisin: Add raisins and cinnamon to the dough for a sweet option.
- Blueberry: For a classic blueberry flavour, add fresh blueberries to the dough.
- Whole Wheat: Substitute half of the all-purpose flour with whole wheat flour for a nuttier flavour. Whole wheat flour absorbs more liquid, so you may need to add a few tablespoons of water to the dough.
- Herb and Garlic: Add fresh or roasted garlic and fresh herbs to the dough before baking for a deliciously savoury twist.

Time needed: 1 hour and 15 minutes
Here’s how to make the BEST protein bagels!
- Make the Dough.
In a large bowl mix flour, yeast, and salt. Blend the cottage cheese very well in a blender or food processor until it becomes creamy. Add the blended cottage cheese to the bowl and mix well until a shaggy dough is formed.
- Knead the Dough.
Knead your dough for about 3-5 minutes. Don’t worry if your dough isn’t nice and fluffy – this is a dryer dough and it might still look a little shaggy, even after kneading for a few minutes.
- Rest the Dough.
Cover the bowl with plastic wrap and let the dough rest for 45 minutes to 1 hour in a warm place. It will not double in size but the gluten and the yeasty flavour will develop.
- Form the Bagels.
Line a baking sheet with parchment paper and preheat your oven to 375 degrees Fahrenheit (190 degrees Celsius). Turn out your dough onto a floured surface. Keep in mind that this dough is a bit on the dry side so to don’t add too much flour! Divide the dough into 8 pieces (for 8 large bagels) or into 12 pieces for smaller bagels. Roll each piece into a ball with a smooth surface. To form a bagel shape, press your middle and ring finger (together) into the centre of one ball to make a hole right through the middle. Move your fingers gently in a circular motion to make the hole a little bit bigger. Then, holding the bagel with your thumbs inside the hole, pick it up off the work surface and stretch it gently to make the hole bigger. The goal is to make the hole a little bigger than you actually want it, as the dough will shrink back slightly during baking.
- Bake the Bagels.
Place the bagels you’ve formed onto the baking sheet and let them sit for about 10 minutes. In a small bowl mix together the egg and water with a fork. Brush the bagels with the egg wash and sprinkle bagel seasoning on them generously, or simply sprinkle a little bit of salt. Bake them for 15-20 mins at 375 degrees Fahrenheit (190 degrees Celsius).
- Enjoy!
Let them cool, then slice and serve with your favourite protein-packed toppings.

What’s the difference between cottage cheese bagels and Greek yogurt bagels?
Greek yogurt bagels are made with Greek yogurt while these protein bagels are made with cottage cheese for added protein.
What can I use for topping these protein bagels?
Once you brush them with egg wash before baking, spoon over some sesame seeds, poppy seeds, flaky sea salt, or everything bagel seasoning.
Do protein bagels contain protein powder?
There is no whey protein powder in this recipe. These bagels are made with only flour, salt, yeast, and cottage cheese.
Can I use a different flour in this recipe to reduce the carbs or calories?
You may be tempted to use gluten-free flour, almond flour, or even self-rising flour in this recipe, however we recommend using all purpose flour for best results.
Can I make these protein bagels ahead of time?
This protein bagel dough can be made ahead and stored in the refrigerator for about 24 hours or overnight before forming and baking the bagels. You can also freeze the bagels before baking and bake them from frozen until golden brown (add several minutes of baking time0.
How do I store them?
Once they’re baked and cooled, store them in the fridge in an airtight container for up to 7 days or in the freezer for up to 3 months.



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Protein Bagels

Recipe: Equipment
Recipe: Ingredients
For the bagels:
- 3 cups all purpose flour
- 2 teaspoons active dry yeast
- 1 teaspoon salt
- 2 cups cottage cheese at room temperature
For the egg wash:
- 1 egg
- 2 tablespoons water
- 3 tablespoons Everything Bagel Seasoning
Recipe: Instructions
- In a large bowl, mix flour, yeast, and salt.
- Blend the cottage cheese very well in a blender or food processor, until it becomes creamy.
- Add the blended cottage cheese to the bowl and mix well until a shaggy dough is formed.
- Knead your dough for about 3-5 minutes. Don't worry if your dough isn't nice and fluffy – this is a dryer dough and it might still look a little shaggy, even after kneading for a few minutes.
- Cover the bowl with plastic wrap and let the dough rest for 45 minutes to 1 hour in a warm place. It will not double in size, but the gluten and the yeasty flavour will develop.
- Line a baking sheet with parchment paper and preheat your oven to 375℉ (190℃).
- Turn out your dough onto your work surface adding a little bit of flour the work surface. Keep in mind that this dough is a bit on the dry side, so to don't add too much flour!
- Divide the dough into 6 pieces (for 6 large bagels) or into 12 pieces for smaller bagels. Roll each piece into a ball with a smooth surface.
- To form a bagel shape, press your middle and ring finger (together) into the centre of one ball to make a hole right through the middle. Move your fingers gently in a circular motion to make the hole a little bit bigger.
- Then, holding the bagel with your thumbs inside the hole, pick it up off the work surface and stretch it gently to make the hole bigger. The goal is to make the hole a little bigger than you actually want it, as the dough will shrink back slightly during baking.
- Place the bagels you've formed onto the baking sheet and let them sit for about 10 minutes.
- In a small bowl, mix together the egg and water with a fork.
- Brush the bagels with the egg wash and sprinkle bagel seasoning on them generously, or simply sprinkle a little bit of salt.
- Bake them for 15-20 mins at 375℉ (190℃).
- Let them cool, then slice and serve with your favourite protein-packed toppings.
Recipe: Notes
A Note about Substitutions
Replacing the yeast with 2 teaspoons of baking powder will also work in this recipe, but traditional bagels contain yeast which gives them a distinctive bready, flavour. It’s a matter of personal preference – if you prefer to use baking powder and skip the 45 minute resting time, go ahead. As we tested this recipe repeatedly, we found that the yeast creates a more delicious flavour and bread-like texture, making these bagels much more similar to standard bagels.Storage instructions
These bagels keep well in the fridge for up to a week or in the freezer for up to 3 months if protected well from freezer burn (store them in an airtight container or bag). We love freezing them sliced in half so we can defrost them directly in the toaster for a quick breakfast.Recipe: Nutrition
Notice: Nutrition is auto-calculated, using Spoonacular, for your convenience. Where relevant, we recommend using your own nutrition calculations.

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